My ears are burning :s5:
You need to piss off the auto loom altogether. Provided it's not one of the rare ones which has no plug into the loom?

It should have a square and a round plug. Simply organise the square plug so that it matches your manual box loom, colour for colour. Since the reverse and neutral switches are simple open/close circuits, it doesn't matter which way round those wires go.
BTW I found it was very easy to accidentally short out the fuse for the reverse lights, I suggest you take them out beforehand
Hey crusty, your brake lights shouldn't be on constantly. (well OK that was a bit obvious

) The only thing I can think of is if the switch on the brake pedal fell out?
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Proud TQE Operator and President of SEFAG - the Society for the Elimination of Ford Automatic Gearboxes

Pacemaker headers + 2.5" exhaust
EF Fairmont interior
MP3 player
Lowered King springs
5 speed manual
EF motor
Newest mod: EF Ghia wiring loom and dash